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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29344435_29345093_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29344435 - 29345093
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TAGTCTGTAATA
Flanking Amino Acid:
ILLVIHGNTQSPSVNNVEPL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
86.3
0.82
0.7
84.3
30.1
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
56.4
0.2
2
67.82
39.4

Associated Gene:

Gene:
MAP3K2
Ensembl Gene ID:
ENSAPLG00000012930
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013513
29334762 - 29363936
29175