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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29357040_29358796_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29357040 - 29358796
Intron Length:
1757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CCGTGGTAAATC
Flanking Amino Acid:
FDPDSPETSKEVNALECEIQ
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
89.4
0.89
0.6
85.7
21.4
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
38.6
-0.8
2.4
44.56
44.8

Associated Gene:

Gene:
MAP3K2
Ensembl Gene ID:
ENSAPLG00000012930
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013513
29334762 - 29363936
29175