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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29450001_29450432_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29450001 - 29450432
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGGG
5'SS Class:
major
3'SS Sequence:
TAATGTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ACATTTATAAAT
Flanking Amino Acid:
VERQLPGVLASIGHGKPAIN
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
60.6
44.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
79.4
0.66
0.9
73.4
41.4
Minor 5ss
28.7
-2.4
3.5
38.3
46.7
Minor BPS
49.2
0.02
1.7
64.9
39.4

Associated Gene:

Gene:
HNMT
Ensembl Gene ID:
ENSAPLG00000022720
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034646
29446472 - 29461714
15243