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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29450486_29453458_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29450486 - 29453458
Intron Length:
2973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCGT
5'SS Class:
major
3'SS Sequence:
CCTCTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTGCTTTCACC
Flanking Amino Acid:
INVLSVGGGAGEIDLQILSA
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.3
46
Major BPS
77.7
0.69
1
81
30.2
Major PPT
75.5
0.57
0.7
68.8
31.7
Minor 5ss
45.7
-0.5
2.9
65.4
45.8
Minor BPS
64.6
0.44
1.9
77.59
39

Associated Gene:

Gene:
HNMT
Ensembl Gene ID:
ENSAPLG00000022720
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034646
29446472 - 29461714
15243