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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_295035_296138_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
295035 - 296138
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TGTGTCTAAATA
Flanking Amino Acid:
QELIFPPELMRMAENQPKRT
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
82.5
30.8
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
77
0.61
0.9
75.8
33.4
Minor 5ss
46.3
-0.4
2.8
64.2
42.3
Minor BPS
55.8
0.18
1.8
67
40.2

Associated Gene:

Gene:
AOX1
Ensembl Gene ID:
ENSAPLG00000008708
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025359
264624 - 306968
42345
ENSAPLT00000018331
263911 - 307009
43099
ENSAPLT00000009339
268146 - 306968
38823
ENSAPLT00000045156
267812 - 306968
39157