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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_295035_299650_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
295035 - 299650
Intron Length:
4616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TGTGTCTAAATA
Flanking Amino Acid:
ILDACKTFCKRMAENQPKRT
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
77
0.61
0.9
75.8
33.4
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
55.8
0.18
1.8
67
40.2

Associated Gene:

Gene:
AOX1
Ensembl Gene ID:
ENSAPLG00000008708
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022758
264624 - 306968
42345