About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29613906_29614169_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29613906 - 29614169
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGTCG
5'SS Class:
strong_major
3'SS Sequence:
GTATTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
FSSGPNDKMKWCLRVNPKGL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
65.8
40.6
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
84
0.76
0.8
81.4
36
Minor 5ss
37.2
-1.4
3.2
44.8
44.2
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
SPOPL
Ensembl Gene ID:
ENSAPLG00000008966
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009360
29613479 - 29628309
14831