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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29621263_29621351_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29621263 - 29621351
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTCT
5'SS Class:
major
3'SS Sequence:
TCTCTTGCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
AACTGATTAATA
Flanking Amino Acid:
EFKAHKSVLAARSPVFNAMF
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.5
36.6
Major BPS
79.4
0.73
1
80.1
32
Major PPT
77.5
0.62
0.8
72.5
32.4
Minor 5ss
41.8
-0.9
3
60.1
44.2
Minor BPS
49.1
-0
2
59.97
40.1

Associated Gene:

Gene:
SPOPL
Ensembl Gene ID:
ENSAPLG00000008966
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009360
29613479 - 29628309
14831