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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29621408_29622677_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29621408 - 29622677
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TACCATTTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTTCTTTACCA
Flanking Amino Acid:
FEHEMEESKKNRVEINDVDP
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.9
0.45
1
62.4
42.6
Minor 5ss
43.8
-0.7
3.2
64.9
46.4
Minor BPS
71
0.66
1.6
78.6
38.6

Associated Gene:

Gene:
SPOPL
Ensembl Gene ID:
ENSAPLG00000008966
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009360
29613479 - 29628309
14831