Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_296220_296993_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

296220 - 296993

Intron Length:

774

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGATTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTTTTAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAGAT

U12 Branch Point Sequence:

TTTCTTTTTAAG

Flanking Amino Acid:

EEDLFDKEEKISTRLFSPDE

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

81.6

33.2

Major BPS

62.6

0.31

58.7

38.1

Major PPT

81.5

0.71

0.9

86.5

24.9

Minor 5ss

42.5

-0.8

3.4

64.3

47.2

Minor BPS

49.4

-0.1

1.8

61.38

40.3

Associated Gene:

Gene:

AOX1

Ensembl Gene ID:

ENSAPLG00000008708

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045156

267812 - 306968

39157

ENSAPLT00000025359

264624 - 306968

42345

ENSAPLT00000018331

263911 - 307009

43099

ENSAPLT00000009339

268146 - 306968

38823