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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29625318_29627445_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29625318 - 29627445
Intron Length:
2128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTATTCTTAATA
Flanking Amino Acid:
GCKDGKNWNSNQATDIMETA
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
86.3
0.82
0.8
83.9
31.1
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
74.8
0.77
1.2
75.44
36.3

Associated Gene:

Gene:
SPOPL
Ensembl Gene ID:
ENSAPLG00000008966
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009360
29613479 - 29628309
14831