Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29649974_29677019_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29649974 - 29677019

Intron Length:

27046

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGCTGT

5'SS Class:

major

3'SS Sequence:

TGTTTTGAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CTGTTTTGAAAC

Flanking Amino Acid:

VKSFGICLPEVFCDANQVVQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

67.5

40.3

Major BPS

100

1.24

0.5

100

Major PPT

70.1

0.45

1.1

66.4

43.3

Minor 5ss

46.2

-0.4

2.8

64.5

46.9

Minor BPS

50.9

0.01

1.5

59.51

39.9

Associated Gene:

Gene:

NXPH2

Ensembl Gene ID:

ENSAPLG00000001877

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001871

29649230 - 29678660

29431