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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_297075_299650_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
297075 - 299650
Intron Length:
2576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATGTTCCTATTT
Flanking Amino Acid:
ILDACKTFCKESVCCQSKAS
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
76.9
0.61
0.8
74.5
35
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
49.5
0.04
1.9
70.37
41.1

Associated Gene:

Gene:
AOX1
Ensembl Gene ID:
ENSAPLG00000008708
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045156
267812 - 306968
39157
ENSAPLT00000025359
264624 - 306968
42345
ENSAPLT00000018331
263911 - 307009
43099
ENSAPLT00000009339
268146 - 306968
38823