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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29716575_29717378_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29716575 - 29717378
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCGGGTGAA
5'SS Class:
major
3'SS Sequence:
TCTCTAAATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
GATCTCTAAATT
Flanking Amino Acid:
ICTFCLSEQRNHHSGPSHVV
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
64
37.5
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
69.9
0.45
0.9
67.9
36.8
Minor 5ss
16.5
-3.9
3.7
21
31
Minor BPS
56.3
0.28
1.7
71
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027181
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023244
29716532 - 29721973
5442