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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29796166_29801981_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29796166 - 29801981
Intron Length:
5816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTCACTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTCTAAACA
Flanking Amino Acid:
EGWVGMLCQTPICEQKCLFG
Intron Amino Acid Position:
1583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.3
70.1
40.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.7
0.67
0.8
74.3
29.6
Minor 5ss
37.2
-1.4
3.3
55.2
42.1
Minor BPS
71.2
0.66
1.6
80.05
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044658
29789554 - 29964865
175312
ENSAPLT00000009245
29789554 - 29927549
137996
ENSAPLT00000048184
29789554 - 29966531
176978