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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29802078_29803230_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29802078 - 29803230
Intron Length:
1153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
TCAATCTGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATCTTCTCACTT
Flanking Amino Acid:
SGWRGKHCNKPVCLQKCLNG
Intron Amino Acid Position:
1551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.3
81.8
38.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71.9
0.49
1
69.3
41.4
Minor 5ss
46.7
-0.3
2.9
66
38.4
Minor BPS
50.6
0.1
1.8
69.65
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029952
29789543 - 29966531
176989
ENSAPLT00000048184
29789554 - 29966531
176978
ENSAPLT00000020404
29797457 - 29966531
169075
ENSAPLT00000044658
29789554 - 29964865
175312
ENSAPLT00000009245
29789554 - 29927549
137996
ENSAPLT00000042459
29799800 - 29966531
166732
ENSAPLT00000040789
29789543 - 29966531
176989