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Intron Name: Anas_platyrhynchos_platyrhynchos_7_29816616_29818130_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29816616 - 29818130

Intron Length:

1515

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTCCTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTAAA

U12 Branch Point Sequence:

GTGCACTAAACT

Flanking Amino Acid:

YGFYGPQCQRAVCIPPCKNG

Intron Amino Acid Position:

1487

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.94

0.8

78.6

37.2

Major BPS

65.2

0.38

0.9

65.5

27.9

Major PPT

80.7

0.69

0.7

73.8

31.3

Minor 5ss

31.6

-2.1

3.1

38.7

46.6

Minor BPS

52.6

0.16

1.9

71.44

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008881

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029952

29789543 - 29966531

176989

ENSAPLT00000048184

29789554 - 29966531

176978

ENSAPLT00000020404

29797457 - 29966531

169075

ENSAPLT00000044658

29789554 - 29964865

175312

ENSAPLT00000009245

29789554 - 29927549

137996

ENSAPLT00000042459

29799800 - 29966531

166732

ENSAPLT00000040789

29789543 - 29966531

176989