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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29818227_29821112_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29818227 - 29821112
Intron Length:
2886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCACATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTATCTTACCT
Flanking Amino Acid:
SGWSSPSCEIAVCNPLCLNG
Intron Amino Acid Position:
1455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
76.5
39.2
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
72.7
0.51
0.9
65.7
34
Minor 5ss
34.9
-1.7
3.3
50
46.3
Minor BPS
70.7
0.73
1.6
88.22
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020404
29797457 - 29966531
169075
ENSAPLT00000044658
29789554 - 29964865
175312
ENSAPLT00000009245
29789554 - 29927549
137996
ENSAPLT00000042459
29799800 - 29966531
166732
ENSAPLT00000040789
29789543 - 29966531
176989
ENSAPLT00000029952
29789543 - 29966531
176989
ENSAPLT00000048184
29789554 - 29966531
176978