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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29821209_29821797_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29821209 - 29821797
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
GTGCTTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTGCTCATAACA
Flanking Amino Acid:
YGFVGPRCETMVCNRHCHNG
Intron Amino Acid Position:
1511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.1
32.7
Major BPS
79.2
0.72
1
75
40
Major PPT
72.5
0.51
0.9
65.3
41.1
Minor 5ss
43.8
-0.7
2.4
52.2
38.6
Minor BPS
62.5
0.39
1.6
73.56
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009245
29789554 - 29927549
137996
ENSAPLT00000042459
29799800 - 29966531
166732
ENSAPLT00000008889
29819749 - 29966531
146783
ENSAPLT00000040789
29789543 - 29966531
176989
ENSAPLT00000029952
29789543 - 29966531
176989
ENSAPLT00000048184
29789554 - 29966531
176978
ENSAPLT00000020404
29797457 - 29966531
169075
ENSAPLT00000044658
29789554 - 29964865
175312