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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29830596_29831129_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29830596 - 29831129
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCATT
Flanking Amino Acid:
NEDARGSHHEGHSLDTAPQG
Intron Amino Acid Position:
1389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.9
74.7
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
75
0.56
0.9
75.2
34.2
Minor 5ss
23.3
-3.1
3.9
38.3
46.6
Minor BPS
65.8
0.58
2
89.07
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009245
29789554 - 29927549
137996
ENSAPLT00000008889
29819749 - 29966531
146783
ENSAPLT00000044658
29789554 - 29964865
175312
ENSAPLT00000020404
29797457 - 29966531
169075