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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29831205_29837773_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29831205 - 29837773
Intron Length:
6569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTGCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGGTATTTATCT
Flanking Amino Acid:
EQRAAGLPCKGFKIFPKPCG
Intron Amino Acid Position:
1410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69
0.43
0.8
61.4
35
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
55.7
0.26
1.8
73.5
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009255
29831130 - 29966531
135402