About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29848979_29854706_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29848979 - 29854706
Intron Length:
5728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CAATTATTAACC
Flanking Amino Acid:
YICKCPPGLGGLTCQEDRNE
Intron Amino Acid Position:
1212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
73.4
43.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
78
0.63
0.9
72.5
37.8
Minor 5ss
32.5
-2
3.4
47.7
47.8
Minor BPS
59.9
0.29
1.6
65.38
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009255
29831130 - 29966531
135402
ENSAPLT00000042459
29799800 - 29966531
166732
ENSAPLT00000009245
29789554 - 29927549
137996
ENSAPLT00000040789
29789543 - 29966531
176989
ENSAPLT00000008889
29819749 - 29966531
146783
ENSAPLT00000029952
29789543 - 29966531
176989
ENSAPLT00000048184
29789554 - 29966531
176978
ENSAPLT00000020404
29797457 - 29966531
169075
ENSAPLT00000044658
29789554 - 29964865
175312