About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29856407_29859808_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29856407 - 29859808
Intron Length:
3402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
TTTTGCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
ATTTATGTAATC
Flanking Amino Acid:
ISKFTWSINENNLPPVFQTP
Intron Amino Acid Position:
1055

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
68.1
37
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
78.5
0.64
0.9
77.7
36.7
Minor 5ss
34
-1.8
3.1
41.2
38.7
Minor BPS
51.3
0.02
2.1
69.27
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009255
29831130 - 29966531
135402
ENSAPLT00000042459
29799800 - 29966531
166732
ENSAPLT00000009245
29789554 - 29927549
137996
ENSAPLT00000040789
29789543 - 29966531
176989
ENSAPLT00000008889
29819749 - 29966531
146783
ENSAPLT00000029952
29789543 - 29966531
176989
ENSAPLT00000048184
29789554 - 29966531
176978
ENSAPLT00000020404
29797457 - 29966531
169075
ENSAPLT00000044658
29789554 - 29964865
175312