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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29862789_29867300_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29862789 - 29867300
Intron Length:
4512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGAATT
5'SS Class:
major
3'SS Sequence:
TTGTATCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TATTACTTATAA
Flanking Amino Acid:
DEPFARWQVKITNDGFQYSN
Intron Amino Acid Position:
982

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
78.3
36.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
72.8
0.51
0.9
71.2
39.6
Minor 5ss
39.7
-1.2
3.4
57.9
40.8
Minor BPS
56.6
0.2
1.9
71.38
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009245
29789554 - 29927549
137996
ENSAPLT00000042459
29799800 - 29966531
166732
ENSAPLT00000008889
29819749 - 29966531
146783
ENSAPLT00000029952
29789543 - 29966531
176989
ENSAPLT00000020404
29797457 - 29966531
169075
ENSAPLT00000048184
29789554 - 29966531
176978
ENSAPLT00000009255
29831130 - 29966531
135402
ENSAPLT00000044658
29789554 - 29964865
175312