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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29868660_29884506_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29868660 - 29884506
Intron Length:
15847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTCCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TTATATCTATCT
Flanking Amino Acid:
HSSYDCSIAKKQALEITGLE
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
82.6
0.73
0.7
79.8
25.5
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
48.7
-0
2.1
74.68
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009245
29789554 - 29927549
137996
ENSAPLT00000040789
29789543 - 29966531
176989
ENSAPLT00000008889
29819749 - 29966531
146783
ENSAPLT00000029952
29789543 - 29966531
176989
ENSAPLT00000048184
29789554 - 29966531
176978
ENSAPLT00000020404
29797457 - 29966531
169075
ENSAPLT00000044658
29789554 - 29964865
175312
ENSAPLT00000009255
29831130 - 29966531
135402
ENSAPLT00000042459
29799800 - 29966531
166732