About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29902283_29908014_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29902283 - 29908014
Intron Length:
5732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCCTGTTAGACT
Flanking Amino Acid:
ITLQLSTEDLDRQLPGLPDI
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
83.9
30.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.6
0.6
0.8
74.5
35
Minor 5ss
40.2
-1.1
3
49.9
46.4
Minor BPS
47.2
-0.1
2.1
65.84
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009255
29831130 - 29966531
135402
ENSAPLT00000042459
29799800 - 29966531
166732
ENSAPLT00000009245
29789554 - 29927549
137996
ENSAPLT00000040789
29789543 - 29966531
176989
ENSAPLT00000008889
29819749 - 29966531
146783
ENSAPLT00000029952
29789543 - 29966531
176989
ENSAPLT00000048184
29789554 - 29966531
176978
ENSAPLT00000020404
29797457 - 29966531
169075
ENSAPLT00000044658
29789554 - 29964865
175312