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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29908151_29909409_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29908151 - 29909409
Intron Length:
1259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCCA
5'SS Class:
major
3'SS Sequence:
ATTTTATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
ESKGFYAGIKFLPESLQIAE
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
65.1
40.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.5
0.82
0.8
78.3
39.6
Minor 5ss
31.1
-2.2
3.2
40.1
45.4
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008881
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009255
29831130 - 29966531
135402
ENSAPLT00000042459
29799800 - 29966531
166732
ENSAPLT00000009245
29789554 - 29927549
137996
ENSAPLT00000040789
29789543 - 29966531
176989
ENSAPLT00000048184
29789554 - 29966531
176978
ENSAPLT00000008889
29819749 - 29966531
146783
ENSAPLT00000029952
29789543 - 29966531
176989
ENSAPLT00000020404
29797457 - 29966531
169075
ENSAPLT00000044658
29789554 - 29964865
175312