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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30000703_30014092_R

Intron Information:

Intron Rank:
149628
Intron Class:
major
Intron Phase:
Intron Coordinates:
30000703 - 30014092
Intron Length:
13390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.6
33.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.1
0.59
0.9
74.9
39.5
Minor 5ss
34.2
-1.8
3.2
47.6
47.9
Minor BPS
59.3
0.37
1.7
77.93
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028025
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037116
29999128 - 30014126
14999