Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30049917_30054105_R

Intron Information:

Intron Rank:

129295

Intron Class:

major

Intron Phase:

Intron Coordinates:

30049917 - 30054105

Intron Length:

4189

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGAAGT

5'SS Class:

major

3'SS Sequence:

CTTCTGTCAGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TCTTCTGTCAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

71.9

39.5

Major BPS

90.4

0.7

90.2

19.3

Major PPT

74.3

0.55

0.9

70.1

35.1

Minor 5ss

30.2

-2.3

41.4

44.7

Minor BPS

44.1

-0.4

2.5

60.93

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016791

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045052

30049703 - 30061866

12164

ENSAPLT00000023962

30049703 - 30063478

13776