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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_300719_301295_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
300719 - 301295
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GGTGTTTTATTT
Flanking Amino Acid:
STKSRVHPVQERLAKCHGSQ
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
74.2
36.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
28.3
-2.5
2.7
32
42.1
Minor BPS
49.2
0.02
1.6
64.27
41

Associated Gene:

Gene:
AOX1
Ensembl Gene ID:
ENSAPLG00000008708
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018331
263911 - 307009
43099
ENSAPLT00000009339
268146 - 306968
38823
ENSAPLT00000045156
267812 - 306968
39157
ENSAPLT00000025359
264624 - 306968
42345
ENSAPLT00000022758
264624 - 306968
42345