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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30103908_30105317_R

Intron Information:

Intron Rank:
86
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30103908 - 30105317
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTATGCATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTAGCTTATTT
Flanking Amino Acid:
IGLFLCKRKRRTKTIRRQPI
Intron Amino Acid Position:
4163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.2
0.61
0.9
70
40
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
50.7
0.1
2.1
72.13
45.2

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191