About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30105409_30107581_R

Intron Information:

Intron Rank:
85
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30105409 - 30107581
Intron Length:
2173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAACAT
U12 Branch Point Sequence:
TGAACATTCAGT
Flanking Amino Acid:
KSSKSDNISTRSIAIIVPLV
Intron Amino Acid Position:
4133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
55.8
0.15
1.3
63.4
42.8
Major PPT
82.2
0.72
0.8
81
31
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
44.2
-0.3
2.3
63.8
45.6

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191