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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30122186_30125070_R

Intron Information:

Intron Rank:
82
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30122186 - 30125070
Intron Length:
2885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
ATGTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTTTGTAATT
Flanking Amino Acid:
PEYTGDRCQYYVCHHYCVNS
Intron Amino Acid Position:
4014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.3
0.75
0.8
77.8
36
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
58.1
0.33
2
78.3
39.3

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191