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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30125233_30136160_R

Intron Information:

Intron Rank:
81
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30125233 - 30136160
Intron Length:
10928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TTGTTTTGAACA
Flanking Amino Acid:
NGGTCGASLLGRPTCNCALG
Intron Amino Acid Position:
3960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
75.6
0.58
1
73.3
40.9
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
67.7
0.55
1.4
75.45
36.1

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191