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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30147043_30153112_R

Intron Information:

Intron Rank:
75
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30147043 - 30153112
Intron Length:
6070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTGTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTAAAT
Flanking Amino Acid:
ERRQSNSGLICPEFKRPRGI
Intron Amino Acid Position:
3656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.8
0.76
0.8
81.1
30.9
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
72.8
0.79
1.6
89.56
33.7

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191