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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30153355_30154101_R

Intron Information:

Intron Rank:
74
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30153355 - 30154101
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TAATAATTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTACCTTATTT
Flanking Amino Acid:
KERNNSCVAKGSEDQVLYVA
Intron Amino Acid Position:
3575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
64.6
0.33
1
55.6
44
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
72.8
0.79
1.6
88.8
36.2

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191