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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30155382_30155937_R

Intron Information:

Intron Rank:
72
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30155382 - 30155937
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTTTTAGACA
Flanking Amino Acid:
DGSDEQDCKISVTEYTCEAN
Intron Amino Acid Position:
3490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.5
0.57
1
74.4
40.4
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
63.3
0.41
1.6
77.15
33.9

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191