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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30162943_30163570_R

Intron Information:

Intron Rank:
66
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30162943 - 30163570
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTGTAACA
Flanking Amino Acid:
DYDCADGSDERYCETGCSRD
Intron Amino Acid Position:
3276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.4
0.62
1
73.4
40.7
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
57.8
0.24
2
75.15
36.6

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191