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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30163678_30172416_R

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30163678 - 30172416
Intron Length:
8739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTCTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTC
Flanking Amino Acid:
CGDNSDEENCKPQTCTLKDF
Intron Amino Acid Position:
3240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.9
31.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
89
26.7
Minor 5ss
37.9
-1.4
2.7
47.4
36.1
Minor BPS
73.1
0.7
1.5
81.83
32.8

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191