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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30176861_30179511_R

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30176861 - 30179511
Intron Length:
2651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
CGDEEDERDCPENSCSPDHF
Intron Amino Acid Position:
3161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
75.3
37.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
43.7
-0.7
2.9
62.8
42
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191