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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30179632_30179799_R

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30179632 - 30179799
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCAAATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCTCTTTAAAT
Flanking Amino Acid:
CGDNSDELNCDTHVCNGQDD
Intron Amino Acid Position:
3141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.2
0.61
0.9
67.4
42.4
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
74
0.83
1.3
83.47
37.5

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191