Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30196996_30198449_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30196996 - 30198449

Intron Length:

1454

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATGAAGA

5'SS Class:

major

3'SS Sequence:

ATTTTATTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCATCACCA

Flanking Amino Acid:

PRDLSLDPQAGYLYWIDCCE

Intron Amino Acid Position:

2974

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

64.3

41.7

Major BPS

100

1.24

0.5

100

Major PPT

84.2

0.77

0.8

82.6

33.5

Minor 5ss

38.5

-1.3

2.8

40.3

45.6

Minor BPS

55.9

0.18

2.1

77.1

39.6

Associated Gene:

Gene:

LRP1B

Ensembl Gene ID:

ENSAPLG00000023161

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024637

30099962 - 30604152

504191