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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30200730_30203828_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30200730 - 30203828
Intron Length:
3099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATCA
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
DGSNYTLLKQGLNNVIAIDF
Intron Amino Acid Position:
2873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
66.4
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.6
88.7
20.6
Minor 5ss
43.7
-0.7
2.9
57.2
47.1
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191