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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30203915_30205923_R

Intron Information:

Intron Rank:
54
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
30203915 - 30205923
Intron Length:
2009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCACAA
5'SS Class:
major
3'SS Sequence:
TCCCGGGGTTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
GCTAGTCTAATA
Flanking Amino Acid:
DNPNGCKSLSDEEPFLILAD
Intron Amino Acid Position:
2844

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
60.5
40.1
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
56.6
0.15
1
53
41.6
Minor 5ss
42.9
-0.8
2.9
56.3
47.8
Minor BPS
44.1
-0.4
2
52.99
39.7

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191