About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30206108_30208113_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30206108 - 30208113
Intron Length:
2006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TCAAAATGAATG
Flanking Amino Acid:
DCQDLPVGYKCKCWPGFQLK
Intron Amino Acid Position:
2783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
83.7
27.2
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
34.2
-1.8
2.9
44.9
43.2
Minor BPS
42.2
-0.7
1.8
44.49
40.9

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191