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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30214128_30215109_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30214128 - 30215109
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
GTATTTTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATGT
Flanking Amino Acid:
GSDELSTAGCAPNNTCDENA
Intron Amino Acid Position:
2632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
71.6
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.5
0.66
0.8
78.1
36.2
Minor 5ss
42.9
-0.8
3
54.6
44.9
Minor BPS
61.2
0.43
1.9
82.72
39.3

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191