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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30215239_30217680_R

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30215239 - 30217680
Intron Length:
2442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
AGCATCTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TGAACACTAACA
Flanking Amino Acid:
DGLDESDAICGSVTCAVETF
Intron Amino Acid Position:
2589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
74
0.54
0.9
69.6
40.9
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
49.1
-0
2
64.68
40.4

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191