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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30228527_30228992_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30228527 - 30228992
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CAGAGTCTATCT
Flanking Amino Acid:
IIAVANDTNSCELSPCAQMN
Intron Amino Acid Position:
2321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.1
31.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
43.1
-0.8
2.8
58.5
40.5
Minor BPS
38.1
-0.8
2.1
49.95
43.8

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191