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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30236676_30251470_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30236676 - 30251470
Intron Length:
14795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCATGTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CTTTCTGTAACC
Flanking Amino Acid:
NWSGRKVLIENVGSVEGLAY
Intron Amino Acid Position:
2125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
77.5
0.62
0.9
68.4
41.9
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
64.7
0.44
2
77.59
39

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191