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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30255188_30255477_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30255188 - 30255477
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ACATCTTCAACT
Flanking Amino Acid:
VFGAYIYWSDRAHANGSIRR
Intron Amino Acid Position:
1959

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
79.3
0.66
1
76.8
36.7
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
64.7
0.54
1.5
75.49
41.2

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191